Under Indian law (specifically the Indian Succession Act, 1925 and the Guardians and Wards Act, 1890), you cannot directly sell the flat on your own, even if you paid the loan or cleared the NPA dues using your personal funds.
Even though you are the father and natural guardian, a guardian cannot sell or alienate a minor child's share in an immovable property without prior permission from the District Court (under the Guardians and Wards Act, 1890).
Since you used personal funds/borrowed money to clear the NPA status and save the property from bank foreclosure:
You have a legal claim to seek reimbursement from the estate/property for protecting and preserving the joint asset.
However, this claim must be presented to and approved by the court when seeking permission to sell.