Do not mention about your case in the job form. We will think about it later, when the problem arises. But if is revealed to the employer any time that a criminal case is pending against you, he may remove you from your services.
There is one more solution for your problem. If you can hire a good expensive lawyer, you can file quash petition before the High Court under sec. 482 of Cr.p.c. quashing the FIR. As you are innocent and you have good merits in your case, your petition might be allowed by HC. If your petition is allowed all the other persons involved in the case also will be acquitted.