Many times in this thread you have been advised to consult a lawyer. It is felt that you have neither consulted your lawyer nor any one else.
Instead of saying and telling mode you should have preferred written mode.
At least you could have written the minutes of discussion.
Who has said that ‘they could not find it?’……………………..and find what email or original bills? Did you send original bills too and do you have acknowledgment of having submitted original bills?
For Form16 you can lodge a complaint with ITO-TDS where you file your ITR and jurisdictional CIT-TDS where your company files its ITR.
Before that issue a final notice to appointing authority, MD preferably thru your lawyer.
Chatting with them and in threads may not fetch you any relief.
Sufficient has been discussed in this thread. You need to approach your lawyer now.