If a case is pending (summons/warrants received from court) you have to mention it in the passport appln form. Court has no jurisdiction to direct PO to issue you a PP. Court comes into the picture when passport is refused to you.
Please remember one thing. Hiding the facts of courts cases etc. is a criminal offence. Please read this section, consult your lawyer and act as per his advice:
Section 6 under which the passport authority is empowered to refuse a passport. Apart from other conditions, I mention the following two of them, i.e.
(f) that proceedings in respect of an offence alleged to have been committed by the applicant are pending before a criminal court in India;
(g) that a warrant or summons for the appearance, or a warrant for the arrest, of the applicant has been issued by a court under any law for the time being in force or that an order prohibiting the departure from India of the applicant has been made by any such court;